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Research Article | Volume 5 Issue 2 (July-Dec, 2024) | Pages 1 - 7
A STUDY TO INVESTIGATE EXPRESSIONS OF FAULTY GENE THAT CAUSE TO DISEASES. THERE ARE SEVERAL KINDS OF HEREDITARY DISEASES THAT CAN BE CURED COMPLETELY IF FOUND AND TREATED QUICKLY ENOUGH.
 ,
 ,
1
Lincoln university College, Petaling Jaya Malaysia.
Under a Creative Commons license
Open Access
Received
May 5, 2024
Revised
May 20, 2024
Accepted
June 20, 2024
Published
July 29, 2024
Abstract

The aetiology of many diseases is often attributed to the combined influence of genetic and environmental factors. The discovery of noteworthy genetic features has value in both medical and scientific domains. In the medical field, it aids in the creation of drugs and tailored treatment, while in the scientific realm, it provides insights into the mechanical and evolution aspects of illnesses. Linkage analysis, a method that identifies loci with a tendency to be inherited together, and study of association are among the several genetic techniques that have shown associations between diseases and specific genomic regions, therefore mapping the link between alleles at distinct loci. A multitude of genes are scrutinised in these sorts of investigations, beyond the capacity for experimental testing as probable illness genes. The use of computational techniques to evaluate the potential of certain genes within a given chromosomal region as disease-causing genes is very advantageous. Considerable evidence has been presented on the susceptibility of several illnesses. Alterations in the tempo at which genetic material is transcribed into functional molecules throughout different cellular lineages. In the event when an individual gene or genetic cluster exhibits a higher prevalence among persons with illnesses compared to those who are healthy, it is probable that such gene or genetic cluster contributes to the development or manifestation of the respective illnesses. Microarray studies have been widely used as the primary approach for identifying variations in gene expression levels.

Keywords
INTRODUCTION

When considering illnesses that have genetic roots, the general perception often revolves on infrequent disorders caused by a single gene, such as cystic fibrosis (CF),  haemophilia. An example of the latter would be the hereditary susceptibility to breast cancer. There exists a considerable number of uncommon illnesses, with around 80% of these conditions being attributed to genetic factors. Approximately 5.9% of the population is afflicted with a rare sickness as a consequence of the widespread prevalence of such conditions. The DNA of disease processes, including those that are often seen, has varying degrees of effect on their development. Several variables might potentially increase an individual's susceptibility to acquiring a certain disease, such as a specific form of cancer, while concurrently reducing their vulnerability to a distinct and unrelated ailment, such as diabetes. Numerous illnesses may be attributed to environmental factors, including diabetes, which can arise from inadequate dietary habits and insufficient physical activity. However, it is important to acknowledge that individual variations in genetic composition can lead to diverse cellular and bodily responses to these aforementioned variables. The genetic makeup of individuals determines their vulnerability to pathogen infection, and a diverse array of reactions to such infections may be seen. Furthermore, it is worth noting that the development of the majority of malignancies may be influenced by environmental variables, since these illnesses arise from the progressive accumulation of genetic anomalies during an individual's lifespan. A comprehensive comprehension of disease processes, along with the development of therapeutic interventions, prevention measures, and helpful medicines, need a profound grasp of genetics, including the whole of the human genome and its variations among the broader population [1].

 

The aetiology of several illnesses is contingent upon the interplay between multiple genetic variables and diverse environmental influences. The discovery of relevant genetic variables has significant value in both medical and scientific contexts. In the medical realm, it facilitates the streamlining of drug development processes and enables the creation of tailored treatment approaches. From a scientific perspective, it sheds light on the mechanical and evolutionary dimensions of various illnesses. Linkage analysis, a technique that identifies loci with a tendency to be inherited jointly, and association research are among the several genetic approaches that have shown associations between diseases and specific regions of the genome, therefore mapping the link between alleles at distinct loci. Numerous chromosomal regions have been examined, each including a substantial number of genes that surpass the feasibility of experimental testing as probable disease-causing genes. Due to this, using computational techniques to evaluate the odds of certain genes within a designated chromosomal region serving as causative factors for a particular ailment is very advantageous. A considerable number of illness susceptibilities have been established to a significant extent. Alterations in the duration of gene expression within certain cellular lineages. In some cases, it is probable that the gene is associated with a disease if it is a constituent of a cluster of genes that exhibit a higher prevalence among afflicted persons compared to those who are in good health. Microarray analyses emerged as the prevailing approach for discerning disparities in expression levels. The interaction between proteins encoded by distinct genes associated with a common illness has been observed in many studies. A characteristic feature of a disease-causing gene is its strong association with the protein products of other genes known to cause diseases. A limited subset of previous computational methodologies have used this as a foundational premise to formulate approaches for the detection of pathogenic genes inside protein-protein interactions. In recent times, there has been a notable surge in endeavours aimed at consolidating these distinct fragments of information, exemplified by the discernment of genes exhibiting fluctuating expression and their adjacency to established disease-associated genes. It is postulated that the protein products derived from illness genes exhibit spatial proximity to one other within the protein-protein interactions network, hence aligning with this particular category of methodologies. The use of approximation and greedy algorithms is necessary for the analysis of large-scale protein networks, mostly owing to the existence of genes exhibiting variable expression levels. The primary distinction between their approach and the technique described in the literature is in their integration of identical data without making any assumptions on the tendency of disease-associated genes to aggregate in proximity to genes exhibiting aberrant expression levels [2]..

 

BACKGROUND OF THE STUDY:

Transcriptional regulation plays a pivotal role in the regulation of gene expression. The intricate apparatus necessary to exert such control is now being unveiled via functional and evolutionary studies of genomic architecture. The process of expressing genes requires a diverse array of regulatory elements, extending beyond the promoter region, in order to transpire at appropriate temporal intervals and with precise quantitative levels. Furthermore, introns have the potential to include enhancers and repressor elements, in addition to being present at positions either upstream or downstream of the transcriptional unit. Genes that exhibit highly varied expressed patterns, such as crucial developmental control genes, often possess cis-regulatory domains that extend beyond the boundaries of the transcription unit. The first indications were the identification of chromosomal breaks associated with pathological conditions, which were seen in genomic regions that seemed to be unrelated. The extensive level of conserved seen in several noncoding areas has been shown by comprehensive analyses of genomic sequences on a broad scale. Recent functional studies have suggested that a number of these conserved regions act as transcriptional regulatory elements. Occasionally, these elements may be identified in genes that are distantly linked and located in close proximity to one another. Conserved sections often include binding points for tissue-specific, DNA-binding proteins. The regulation of transcription may be influenced by development changes in chromatin conformation, which might impact the accessibility of proteins to specific locations. The risk for illness may arise from the disturbance of intricately interrelated systems. Contrary to anticipated outcomes resulting from alterations in coding regions, mutations in regulatory elements tend to manifest with more nuanced symptoms [3].

 

PROBLEM STATEMENT:

“Genetic variation may contribute to disease largely through misregulation of gene expression. Mutations in the transcription factors that control cell state may impact the autoregulatory loops that are at the core of cellular regulatory circuitry, leading to the loss of a normal healthy cell state.”

This study examined by Zhao improved annotations of the human genome is necessary to enhance comprehension of the expression of genes programmes have been their regulation, as well as the implications of genes misregulation in disease. In the first stages, it is advisable to ascertain the active transcription of coding for proteins and noncoding genes in certain cell types. The identification of all genes that exhibit expression in a certain mammalian cell type poses substantial challenges. The acquisition of a uniform population consisting of cells from various initial cell types has presented challenges, necessitating the use of large quantities of cells for characterization purposes in previous studies. The comprehensive and accurate identification of ncRNA genes poses challenges due to limitations in the length of reads of frequently used sequencing methods and the transient nature of many ncRNAs. In contrast, the identification of protein-coding genes is facilitated by the presence of a coded sequence. Nevertheless, recent scientific investigations have shown a substantial multitude and assortment of non-coding RNAs (ncRNAs) inside human cells, indicating that an improved annotation of the human genome is imminent [4]

 

RESEARCH OBJECTIVES:

• To find out the diseases that gene therapy can cure successfully.

• To recognize reliable is genetic testing in predicting diseases.

• To find out the four types of genetic testing.

• To explain people about genetic testing.

• To examine diseases that can be detected through genetic testing.

 

LITERATURE REVIEW:

The researchers used a methodology whereby they combined global gene expression data obtained from microarrays with a comprehensive protein-protein interaction network including the whole of the human genome. This approach was undertaken with the aim of identifying an effective mechanism for assigning priority to genes that are associated with diseases. Given the observation that disease genes tend to aggregate in close proximity to other genes associated with sickness within the protein network, the proposal was made to use a Katz centrality value as a means to address this phenomenon. In order to get the score, it is necessary to do a calibration that involves just two factors. The most suitable values for these elements may provide valuable insights into issues that have important biological significance. The initial parameter, denoted as w, serves to modulate the extent to which the protein interaction networks assigns significance to disparities in expression level and spatial closeness. The second parameter, denoted as g, describes the potential for a node to be considered a disease gene even if it does not exhibit differential expression. This finding offers evidence in favour of the concept that the prioritisation of disease-related genes may be facilitated by the use of data obtained from the protein-interaction networks and variations in expression analysis. Contrary to the microarray technology data, the interaction data offers further understanding that may be used to make predictions about previously unidentified disease genes within the scope of the research. Furthermore, the researchers enhanced their methodology by using the available data on well-established illness genes. When considering the whole of genes rather than focusing just on specific gene loci, researchers observed that some genes exhibit significant pleiotropy, meaning they are involved in the physiological pathogenesis of several illnesses. Another piece of evidence that supports the notion of phenotype interdependence, cooccurrence, and similar pathophysiology across several disorders is the discovery of shared genes that are involved in multiple diseases within a network framework. This study presents a novel and streamlined approach for prioritising candidate disease-associated genes. This technique enables the comparison of pathological phenotypes that have common genetic origins [5]

The researchers started their study with the underlying premise that the existing body of literature would provide contrasting evidence to the microarray results. Although microarray results are not susceptible to bias due to publication, it is apparent that the existing literature is impacted, to some extent, by prior studies. The researchers aimed to measure and assess this bias by conducting a comparative analysis of their findings with the "ground truth" provided by microarray data. Upon reflection, it becomes evident that the assumption of a direct correspondence between the findings in literature and microarray data was too simplistic and lacking in nuance. There exists a potential for variation in the connection between the FC threshold and biological activity across different genes. Furthermore, it should be noted that the results of an expression study might vary depending on the chosen FC threshold. The researchers found that too strict FC requirements lead to the use of microarray technology data on expression that may not sufficiently capture biological processes [6]

 

CONCEPTUAL FRAMEWORK:

 

 


 

 

                                                                      (H1)

             Angelman syndrome

 

METHODOLOGY:

Sampling: The subjects in this study were 600 patients sampled from the total population of the Gene Expression.

Data and Measurement: The data were collected during the first half of the annual year 2022. Gene expressions were required. Questionnaire was distributed and quantitative analysis was implemented.

Statistical Software: MS-Excel and SPSS 24 Was used for Statistical analysis.

Statistical Tools: Descriptive analysis Was applied to understand the basic nature of the data. Validity and reliability of the data Was tested through Cronbach alpha and ANOVA.

 

RESULT:

Factor Analysis

A collection of measurement items' latent component structure is often confirmed using factor analysis (FA). The observed (or measured) scores are thought to be explained by latent (or invisible) elements. The core of accuracy analysis is modelling (FA). It focuses on simulating how observed phenomena, unidentified causes, and measurement error interact. If they want to know whether the data may be utilised for factor analysis, perform the Kaiser-Meyer-Olkin (KMO) Test. To guarantee adequate sampling, both the individual model variables and the whole model are checked. The degree to which many variables may share some variance is revealed through data analysis. A smaller percentage often means that the data may be factored more easily. KMO gives values ranging from 0 to 1. Only when the KMO value is between 0.8 and 1.0 is the sample size considered to be appropriate. A KMO of less than 0.6 indicates insufficient sample and requires correction. For this reason, some writers utilise the number 0.5; between the range of 0.5 and 0.6, they must apply their best judgement.

• KMO If it's almost zero, it indicates that the total correlations are little in comparison to the magnitude of the partial correlations. I should reiterate that large-scale correlations pose a serious challenge to component analysis. Kaiser's minimal and maximum requirements are as follows: The following are Kaiser's minimal and maximum requirements. varying from 0.050 to 0.059.

Below-average (0.60-0.69) (0.60-0.69) generally in the middle school level, has a quality point value of 0.80 to 0.89. Between 0.90 and 1.00, there is amazing variation.

 

KMO and Bartlett's Test:

KMO and Bartlett's Test

Kaiser-Meyer-Olkin Measure of Sampling Adequacy.

.973

Bartlett's Test of Sphericity

Approx. Chi-Square

3237.987

df

190

Sig.

.000

 

Finding out whether or not the data can be utilised for factor analysis is the first step in exploratory factor analysis (EFA). Kaiser suggested that the KMO (Kaiser-Meyer-Olkin) measure of sample adequacy coefficient value should be greater than 0.5 as a fundamental need for doing factor analysis in this regard. This is due to KMO, which stands for the Kaiser-Meyer-Olkin sample adequacy measure. The KMO value from this study was .973, or the data that was used. The significance threshold was also confirmed by Bartlett's test of sphericity to be 0.00.

 

Test for Hypothesis

"Posing a hypothesis" is a word used in scientific discourse to describe the process of putting out a guess or assumption for the purpose of further discussion and, eventually, testing to ascertain how probable it is that the guess or assumption is true. The next step in the scientific process is to carry out a literature review after creating a working hypothesis. The hypothesis's prediction of the outcomes was confirmed by the outcomes. When it offers a potential solution to the inquiry's central issue, it is referred to as a hypothesis. It could be necessary to establish a lot of hypotheses, each of which would be tested, depending on the study's scope.

 

Dependent Variable

  • Gene Expression:

The genetic information encoded in an organism's DNA is converted into functional proteins via a biological mechanism known as gene expression. Outlined below are few examples that exemplify the importance of gene expression: The suppression of the secretion of insulin as a regulatory mechanism for maintaining blood glucose levels. The female reproductive systems of mammals undergo a process of X chromosome inactivation in order to prevent an excessive expression of the genes they contain. The regulation of every stage of the eukaryotes cell cycle is governed by how much of cyclin expression.

 

Independent Variable

  • Hereditary Diseases:

Inheritance of a certain ailment from the first generation to another is attributed to genetic abnormalities, namely mutations occurring in specific genes or chromosomes. Genetic disorders may be inherited from one or both parents. Furthermore, it is worth noting that several individuals within a shared immediate familial unit, including but not limited to a mother, daughter and sister, may experience the impact of a particular ailment.

 

Factor

  • Angelman syndrome:

The syndrome of Angelman (AS) is a very infrequent neuro-genetic condition with a prevalence rate of around one in 15 thousand live births or an estimated 500,000 individuals globally. The condition is attributed to a lack of functionality in the UBE3A gene located on the maternally derived 15th chromosome. Angelman syndrome has clinical manifestations and traits that overlap with several illnesses, such as autism, cerebral palsy, and Prader-Willi syndrome. Misdiagnosis often arises as a result of shared traits. Individuals diagnosed with Angelman syndrome usually have developmental challenges that typically manifest between the ages of 6 and 12 months. Typically, more prevalent indications and symptoms manifest during the first stages of childhood, including impairments in ambulation and equilibrium, gastrointestinal complications, epileptic episodes, and limited or absent verbal communication. In spite of the aforementioned symptoms, individuals diagnosed with Angelman syndrome usually have a generally cheerful and enthusiastic disposition. A person diagnosed with autism spectrum disorder (AS) has the ability to positively impact the atmosphere of a room via their radiant smile and infectious laughter.

Angelman syndrome is classified as a hereditary condition. The condition gives rise to developmental delays, speech and balance impairments, cognitive disabilities, and sometimes, epileptic episodes. Individuals diagnosed with Angelman syndrome usually have a propensity for frequent smiling and laughter, accompanied by a generally cheerful and exuberant disposition. Angelman syndrome arises as a consequence of a genetic mutation occurring on chromosome 15. The gene in question is referred to as UBE3A. Typically, individuals get one allele of the gene form both parents, and both alleles are expressed in several bodily regions. Angelman syndrome manifests as a result of monoallelic expression of the gene in certain cerebral regions.

On basis of the above discussion, the researcher formulated the following hypothesis, which was analysed the relationship between Angelman syndrome and gene expression.

H01: “There is no significant relationship between Angelman syndrome and gene expression.”

H1: “There is a significant relationship between Angelman syndrome and gene expression.”

Correlations

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numerous regression analyses in SPSS Statistics were used to generate numerous output tables. This part only delineates the three fundamental tables that are important for comprehending the outcomes of the method of multiple regression used to analyse the data, under the premise that none of the presumptions were violated. The business's data was used in this way. Comprehending the conclusion has significant importance in the analysis of the data pertaining to the eight assumptions required for doing multiple regression. The present study, which is comprehensively elucidated within their broader instructional framework, provides a complete account of the procedural steps to be undertaken. There are many prerequisites that must be satisfied prior to commencing the multiple regression technique. The Model Overview table should be prioritised for examination. The table in question may be consulted by researchers to evaluate the accuracy of a model of regression. It includes important statistical measures such as the coefficient of determination (R), the adjusted coefficient of determination (R2), the modified coefficient of determination (modified R2), and the standard deviation of the estimate.

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Description: Description: Table

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The basic equation that may be used to anticipate disruptive technology based on Albinism, Angelman syndrome, Apert syndrome, Cystic fibrosis: The likelihood of including essential components, Gene Expression= 1.677+ (9.343E-7 x H1_Mean (Angelman syndrome)) 

 

CONCLUSION:

Numerous classification techniques have been devised with the aim of characterising CRC cancer by using gene signatures. The classification of colorectal cancer (CRC) into separate molecular subtypes is as follows: CMS1 denotes the activation of MSI immune response, CMS2 is characterised by conventional the WNT and MYC activation, CMS3 is associated with metabolism dysregulation, and CMS4 is characterised by high EMT and immunological inflammation. The use of this particular paradigm in the identification of distinct tumour types enables the implementation of more precise and focused therapeutic therapies. The CRIS method, which is an alternative categorization technique, aids in the quantification of intrinsic indicators of cancer via the process of normalising stromal heterogeneity. In contrast to the Content Management System (CMS), the CRIS signature exhibited more reliability due to its enhanced capacity for accurate geographical and temporal classification. Over the last decade, many research have used bio informatics FFPE, and frozen tissues in retrospective analyses, resulting in the identification of genetic expression scores that possess prognostic and predictive capabilities. Although significant advancements have been made in these methodologies, there is a pressing need to identify novel prognostic markers that exhibit enhanced precision and prognostic capacity, particularly targeting people who have not responded to current treatments or fall into undefined categories. For example, there is a need for novel prognostic biomarkers to effectively categorise patients with stage II and stage III cancer, therefore facilitating the identification of individuals who are likely to get advantages from adjuvant therapy. Prognostic indicators have the potential to enhance the efficacy of immunotherapies and provide opportunities for novel treatments in advanced stages. The accelerated finding of significant biomarkers may be attributed to the accessibility of many bioinformatics platforms. However, it is crucial to prioritise clinical verification of these signatures before using them in clinical environments. The validity of these biomarkers has been supported by the verification of prognostic scores in several studies using external data sets. However, further validation of their reliability is necessary via bigger cohort or prospective research. In conjunction with TNM staging, the incorporation of a gene expression-based scoring system may provide a more refined prognostic assessment. In addition, the integration of immune-related metrics, such as tumour influencing lymphocytes, neutrophils, or macrophages, has the potential to generate composite scores that can serve as prognostic and proactive biomarkers. This could pave the way for the advancement of personalised immunotherapeutic treatments. Ongoing endeavours to establish and validate multi-gene patterns as biomarkers of predictive value hold promise for enhancing the efficacy of therapeutic interventions for colorectal cancer.

 

LIMITATION:

Mathematics examples, calculations, and other kinds of mathematical representations provide the fundamental framework of quantitative methodologies, which are built upon many underlying assumptions. The aforementioned assumptions cannot be universally assured to be valid in all circumstances. Failing to consider this caution might potentially lead to catastrophic outcomes. The involvement of specialists in quantitative operations might result in substantial expenses. Quantitative techniques are not extensively used by even the most prominent organisations due to the lack of profitability in several applications, which fails to justify the allocation of resources. Managers often depend on intuitive judgements and past experiences rather than empirical evidence when making decisions. Quantitative research may be subject to many problems, including inadequate data, contradictory definitions, suboptimal sample selection, flawed study design, inappropriate comparisons, and inaccurate presentation. The use of quantitative approaches is not suitable for the analysis of qualitative phenomena due to their inability to account for subjective and non-measurable human characteristics. Methodologies fail to include intangible factors such as the manager's skill, mindset, or level of motivation. However, the methods might be applied indirectly by the first quantification of previously abstract claims. In order to ascertain the intelligence level of a manager, it may be important to assign varying degrees of importance to many attributes.

REFERENCES:
  1. Izum, K. (2016). Disorders of Transcriptional Regulation: An Emerging Category of Multiple Malformation Syndromes . Molecular Syndromology, 1-12.

  2. Jackson, M. M. (2018). The genetic basis of disease. Essays in Biochemistry, 1-81.

  3. Kleinjan, D. &. (2016). Long-Range Control of Gene Expression: Emerging Mechanisms and Disruption in Disease. Am. J. Hum. Genet., 1-25.

  4. Zhao, J. Y. (2015). Ranking Candidate Disease Genes from Gene Expression and Protein Interaction: A Katz-Centrality Based Approach. PLoS ONE, 1-9.

  5. Abraham, K. (2016). Disorders of Transcriptional Regulation: An Emerging Category of Multiple Malformation Syndromes . Molecular Syndromology, 1-12.

  6. Brenner, S. (2017). THEORIES OF GENE REGULATION. Laboratory of Molecular Biology, 1-5.

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